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Journal Article
Satya Sahoo, Vinh Nguyen, Olivier Bodenreider, Priti Parikh, Todd Minning, Amit Sheth. A Unified Framework for Managing Provenance Information in Translational Research. 2012 ;.
Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Rosinach, Laura Furlong, Michel Dumontier, Amit Sheth. On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR. 2015 ;abs/1509.04513.  (182.65 KB)
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. Journal of Biomedical Informatics. 2013 ;46(2):238-251.  (915.51 KB)
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
Vinh Nguyen, Jyoti Leeka, Olivier Bodenreider, Amit Sheth. A Formal Graph Model for RDF and Its Implementation. CoRR. 2016 ;abs/1606.00480.  (701.27 KB)
Gang Fu, Evan Bolton, Núria Rosinach, Laura Furlong, Vinh Nguyen, Amit Sheth, Olivier Bodenreider, Michel Dumontier. Exposing Provenance Metadata Using Different RDF Models. CoRR. 2015 ;abs/1509.02822.  (4.91 MB)
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
Conference Proceedings
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Satya Sahoo, Olivier Bodenreider, Krishnaprasad Thirunarayan, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. Scientific and Statistical Database Management (SSDBM 2010). Heidelberg, Germany; 2010. p. 461-470.  (534.62 KB)
Vinh Nguyen, Olivier Bodenreider, Thomas Rindflesch, Amit Sheth. iExplore: A provenance-based application for exploring biomedical knowledge. 8th International Conference on Data Integration in the Life Sciences (DILS 2012). College Park, MD; 2012.  (155.11 KB)
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
Conference Paper
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Vinh Nguyen, Olivier Bodenreider, Todd Minning, Amit Sheth. The Knowledge Driven Exploration of Integrated Biomedical Knowledge Sources Facilitates the Generation of New Hypotheses. In 1st International Conference on Linked Science. Bonn, Germany: Linked Science workshop, ISWC; 2011.  (138.82 KB)
Kelly Zeng, Satya S. Sahoo, Amit Sheth, Olivier Bodenreider. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. In From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007.  (0 bytes)
Amit Sheth, Satya S. Sahoo, Olivier Bodenreider, Kelly Zeng. An experiment in integrating large biomedical knowledge resources with RDF: Application to associating genotype and phenotype information. In Workshop on Health Care and Life Sciences Data Integration for the Semantic Web at WWW2007; 2007.  (246.22 KB)
Soon Jye Kho, Amit Sheth, Olivier Bodenreider. Automatic Identification of Individual Drugs in Death Certificates. In The 17th World Congress of Medical and Health Informatics. Lyon, France; 2018.  (480.86 KB)