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background knowledge
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. Journal of Biomedical Informatics. 2013 ;46(2):238-251.  (915.51 KB)
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
Biomedical knowledge repository
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Context theory
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Death Certificates; Drug Overdose; RxNorm
Soon Jye Kho, Amit Sheth, Olivier Bodenreider. Automatic Identification of Individual Drugs in Death Certificates. In The 17th World Congress of Medical and Health Informatics. Lyon, France; 2018.  (480.86 KB)
domain specific provenance
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Entrez Gene
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
Entrez Knowledge Model (EKoM)
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
Gene Ontology
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
Gene-Pathway data integration
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
Graph mining
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
Hierarchical agglomerative clustering
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
information integration
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
knowledge integration
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
literature-based discovery
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
Literature-based discovery (LBD)
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. Journal of Biomedical Informatics. 2013 ;46(2):238-251.  (915.51 KB)
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
Medical Subject Headings (MeSH)
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
Meta triples
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
Model theoretic semantics
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Multi-ontology schema integration
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
Nicotine dependence
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
OWL
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.
PACE
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Path clustering
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
PrOM
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Provenance context
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Provenance context entity
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Provenance Management Framework
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Provenir ontology
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Provenir ontology and Provenance context entity and Biomedical knowledge repository and Context theory and RDF reification
Satya Sahoo, Olivier Bodenreider, Krishnaprasad Thirunarayan, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. Scientific and Statistical Database Management (SSDBM 2010). Heidelberg, Germany; 2010. p. 461-470.  (534.62 KB)
question answering
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
rdf
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
RDF reification
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)
s Hypothesis and Literature-Based Discovery (LBD)
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas C. Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. 2012.  (915.51 KB)
semantic associations
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. Journal of Biomedical Informatics. 2013 ;46(2):238-251.  (915.51 KB)
Semantic Associations and Background Knowledge and Semantic Predications and Subgraph Creation and Swanson&#39
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas C. Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. 2012.  (915.51 KB)
Semantic Bioinformatics
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
Semantic mashup
Karen Skinner, Joni Rutter, Amit Sheth, Olivier Bodenreider, Satya S. Sahoo. An Ontology-driven Semantic Mash-up of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. Journal of Biomedical Informatics. 2008 ;:752-765.  (617.43 KB)
semantic predications
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas Rindflesch. A Graph-Based Recovery and Decomposition of Swanson's Hypothesis using Semantic Predications. Journal of Biomedical Informatics. 2013 ;46(2):238-251.  (915.51 KB)
Delroy Cameron, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Olivier Bodenreider. Semantic Predications for Complex Information Needs in Biomedical Literature. 2011 IEEE International Conference on Bioinformatics and Biomedicine. Atlanta, GA: IEEE; 2011.
Delroy Cameron, Ramakanth Kavuluru, Olivier Bodenreider, Pablo Mendes, Amit Sheth, Krishnaprasad Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature. In 5th International Conference on Bioinformatics and Biomedicine (BIBM2011). Atlanta GA: 2011 IEEE International Conference on Bioinformatics and Biomedicine; 2011.  (471.3 KB)
semantic provenance
Satya S. Sahoo, Krishnaprasad Thirunarayan, Olivier Bodenreider, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. In SSDBM2010. The 22nd International Conference on Scientific and Statistical Database Management (SSDBM) 2010; 2010.  (810.08 KB)
Semantic relatedness
Delroy Cameron, Ramakanth Kavuluru, Thomas Rindflesch, Amit Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. 2015 ;54:141-157.  (2.37 MB)
Semantic Web
Vinh Nguyen, Olivier Bodenreider, Amit Sheth. Don't like RDF Reification? Making Statements about Statements using Singleton Property. 23rd International conference on World Wide Web (WWW '14). New York, NY: ACM; 2014. p. 759-770.  (382.61 KB)

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