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Conference Paper
Travis Doom, S. Ramachran, Michael Raymer, Dan Krane. ALU elements as time series genomic data. In 2006.
Michael Raymer. Balanced Accuracy for Feature Subset Selection with Genetic Algorithms. In 2005.
Michael Raymer. Beyond CSI: The Science and Engineering of Forensic DNA Analysis and Interpretation. In 2005.
Travis Doom, Ben Kelly, Paul Anderson, Michael Raymer, Nicholas J. DelRaso, Nicholas Reo. Characterization of 1H NMR Spectroscopic Data and the Generation of Synthetic Validation Sets. In Characterization of 1H NMR Spectroscopic Data and the Generation of Synthetic Validation Sets. 2009.
Michael Raymer. Charting the Winds of Evolutionary Change:  Bioinformatics Methods for Identifying Bias in Prokaryotic Codon Usage. In 2007.
Michael Raymer. Charting the Winds of Evolutionary Change: Bioinformatics Methods for Identifying Bias in Prokaryotic Codon Usage. In Charting the Winds of Evolutionary Change: Bioinformatics Methods for Identifying Bias in Prokaryotic Codon Usage. 2007.
Ashwin Manjunatha, Paul Anderson, Satya S. Sahoo, Ajith Ranabahu, Michael Raymer, Amit Sheth. Cloud Based Scientific Workflow for NMR Data Analysis. In 18th Annual International Conference on Intelligent Systems for Molecular Biology. Boston, MA: 18th Annual International Conference on Intelligent Systems for Molecular Biology; 2010.  (2.51 MB)
L. Kuhn, Michael Raymer, P. Sanschagrin. Cluster Analysis of Multiple Serine Protease Structures Identifies Conserved Water Sites Involved in Structure and Specificity. In 1997.
M. Westrick, Michael Raymer, A. Neuforth, Nicholas Reo, Nicholas J. DelRaso, D. Mahle. Combined Urine and Plasma Metabolomic Analysis of alpha-Napthylisothiocyanate (ANIT) Liver Toxicity in the Rat. In 2006.
Travis Doom, Amanda Hanes, D. Krane, Michael Raymer. A Comparison of Codon Usage Trends in Prokaryotes. In A Comparison of Codon Usage Trends in Prokaryotes. 2009.
B. Kelly, Travis Doom, P. Erson, Nicholas Reo, Nicholas J. DelRaso, Michael Raymer. Comparison of Statistical Techniques for the Analysis of Metabolic Toxicological Data Derived from NMR Spectroscopy. In 2007.
Michael Raymer, G. Alter, D. Sweeney, L. Mitchell, P. Erson. Computational and Experimental Methods for High Confidence Protein Structure Prediction. In 2006.
Michael Raymer. Computational Biology for Drug Design: Understanding how proteins and waters interact. In 2001.
Michael Raymer. CSI Revisited: The Science of Forensic DNA Analysis. In 2007.
Dan Krane, J. Gilder, Travis Doom, Michael Raymer, S. Ford. Differences in electropherogram peak heights reported by different versions of the Genescan(R) software. In 2003.
P. Sanshagrin, W. Punch, E. Goodman, L. Kuhn, Michael Raymer. Discovering the Chemistry of Conserved First-Shell and Active-Site Hydration in Proteins Using Pattern Classification with a Genetic Algorithm. In 1997.
P. Sanschagrin, L. Kuhn, Michael Raymer, E. Goodman, W. Punch. Elucidating the Determinants of Conserved Protein Surface Solvation Using a Genetic Algorithm and Nearest Neighbor Classifier. In 1998.
Michael Raymer. Fundamental Concepts of Bioinformatics. In 2008.
Michael Raymer. Fundamental Concepts of Bioinformatics. In 2007.
Michael Raymer. Fundamental Concepts of Bioinformatics. In 2006.
Michael Raymer, M. Peterson, Travis Doom. GA-facilitated cosine classifier optimization with application to the biochemistry of protein-water interactions. In 2002.
M. Peterson, Michael Raymer, Travis Doom. GA-Facilitated KNN Classifier Optimization with Varying Similarity Measures. In 2005.
M. Peterson, Michael Raymer, Travis Doom. GA-facilitated knowledge discovery and pattern recognition optimization applied to the biochemistry of protein solvation. In 2004.
P. Sanschagrin, E. Goodman, W. F. Punch III, L. Kuhn, Michael Raymer. Genetic Algorithm Prediction of Water-mediated Ligand Interactions and the Implications for the Chemistry of Water Binding. In 1995.
W. Punch, Michael Raymer, L. Kuhn, E. Goodman. Genetic Programming for Improved Data Mining – Application to the Biochemistry of Protein Interactions. In 1996.
Michael Raymer, E. Goodman, W. Punch, L. Kuhn. Genetic Programming for Improved Data Mining: Application to the Biochemistry of Protein Interactions. In 1996.
Michael Raymer, P. Sanschagrin, L. Kuhn, V. Schnecke. How proteins fold, flex, and bind other molecules. In 1999.
D. Holstius, Michael Raymer, L. Kuhn, P. Sanschagrin. Identifying the Determinants of Conserved Protein Solvation. In 1998.
L. Kuhn, P. Sanschagrin, Michael Raymer, W. B. Erson, C. E. Barkham. Implications of Structural Comparison of Prostaglandin Synthase Isozymes and Ribonucleotide Reductase for Understanding their Specificity and Catalysis. In 1997.
Gina Cooper, Michael Raymer. Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices. In The 2009 International Conference on Bioinformatics and Computational Biology (BIOCOMP 09). Las Vegas, Nevada; 2009.  (1.7 MB)
Dan Krane, Travis Doom, G. Cooper, N. Futamura, Michael Raymer. Indexing genomic databases. In 2004.
Michael Raymer. Introduction to Bioinformatics. In 2008.
Dan Krane, D. Raiford, E. Heizer, Michael Raymer. An Investigation of Codon Usage Bias Including Visualization and Quantification in Organisms Exhibiting Multiple Biases. In 2006.
D. Raiford, Dan Krane, Travis Doom, Michael Raymer. Isolation and visualization of codon usage biases. In 2006.
Michael Raymer, A. Kuhn, W. Punch. Knowledge Discovery in Biological Datasets Using a Hybrid Bayes Classifier/Evolutionary Algorithm. In 2001.
M. Peterson, Travis Doom, Michael Raymer. Knowledge Discovery in Large Biological Data Sets Using Hybrid Classifier/Evolutionary Algorithms. In 2004.
Michael Raymer, Travis Doom, M. Peterson. Knowledge Discovery in Large Biological Data Sets Using Hybrid Classifier/Evolutionary Algorithms. In 2004.
Michael Raymer. Learning From Nature - Genetic Algorithms Applied to Protein Recognition. In 1996.
Paul Anderson, Ajith Ranabahu, Deirdre Mahle, Nicholas Reo, Michael Raymer, Amit Sheth, Nicholas J. DelRaso. Localized Deconvolution: Characterizing NMR-based Metabolomics Spectroscopic Data using Localized High-throughput Deconvolution. In International Conference on Bioinformatics & Computational Biology. Las Vegas, Nevada, USA; 2012.  (638.36 KB)
Michael Raymer. Molecular graphics: visualization of proteins. In 2001.
Dan Krane, Travis Doom, Michael Raymer, D. Raiford. A multi-objective genetic algorithm that employs a hybrid approach for isolating codon usage bias indicative of translational efficiency. In 2007.
Nathan Klingbeil, Kuldip Rattan, Michael Raymer, David Reynolds, Richard Mercer, Anant Kukreti, Brian Randolph. A National Model for Engineering Mathematics Education. In 117th ASEE Annual Conference and Exposition. Honolulu, HI: Proceedings of the 2007 ASEE Annual Conference & Exposition; 2007. p. 24-27.
Michael Raymer, Travis Doom, Dan Krane. NSF workshop on incorporating genomics into the undergraduate curriculum II. In 2003.
Michael Raymer, Satya S. Sahoo, Cory Henson, William York, Amit Sheth. Ontology Driven Semantic Provenance for Heterogeneous Bionomics Experimental Data. In 2008.  (173.29 KB)
Michael Raymer. An Overview of Bioinformatics and Computational Biology. In 2000.
E. Goodman, L. Kuhn, Michael Raymer, P. Sanschagrin, W. Punch. Pattern Recognition Using Evolutionary Algorithms Applied to Understanding Water-Mediated Recognition in Proteins. In 1996.
Travis Doom, Michael Raymer, Michael Raymer, J. Gilder. PocketMol: A Molecular Visualization Program for the Pocket PC. In 2001.
Travis Doom, Michael Raymer, Michael Raymer, J. Gilder. PocketMol: A Molecular Visualization Program for the Pocket PC. In 2001.
J. Gilder, Michael Raymer, Travis Doom. PocketMol: A Molecular Visualization Program for the PocketPC. In PocketMol: A Molecular Visualization Program for the PocketPC. 2001.

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