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2001
Travis Doom, Michael Raymer, Michael Raymer, J. Gilder. PocketMol: A Molecular Visualization Program for the Pocket PC. In 2001.
Travis Doom, Michael Raymer, Michael Raymer, J. Gilder. PocketMol: A Molecular Visualization Program for the Pocket PC. 2001 ;.
J. Gilder, Michael Raymer, Travis Doom. PocketMol: A Molecular Visualization Program for the PocketPC. In PocketMol: A Molecular Visualization Program for the PocketPC. 2001.
Michael Raymer, Travis Doom, J. Gilder. PocketMol: A Molecular Visualization Tool for the PocketPC. In 2001.
Michael Peterson, Travis Doom, Michael Raymer. Prediction Enhancement of Protein-Water Binding Conservation through Evolutionary Computation. In Symposium on Bioinformatics for Drug Development. Toledo, OH; 2001.
Michael Raymer, Travis Doom, M. Peterson. Prediction Enhancement of Protein-Water Binding Conservation through Evolutionary Computation. In 2001.
D. Sweeney, Travis Doom, Michael Raymer. Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling. In 2001.
D. Sweeney, G. Alter, Michael Raymer, Travis Doom. Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling. 2001 ;.
Michael Raymer, G. Alter, D. Sweeney, Travis Doom. Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling. In 2001.
2002
Michael Raymer, M. Peterson, Travis Doom. GA-facilitated cosine classifier optimization with application to the biochemistry of protein-water interactions. In 2002.
Dan Krane, Travis Doom, Michael Raymer, O. Garcia. A Proposed Undergraduate Bioinformatics Curriculum for Computer Scientists. In 2002.
Dan Krane, Travis Doom, Michael Raymer. SF workshop on incorporating genomics into the undergraduate curriculum. In 2002.
2003
Dan Krane, Travis Doom, Michael Raymer, O. Garcia. Crossing the interdisciplinary barrier: A baccalaureate computer science option in bioinformatics. 2003 ;.
Dan Krane, J. Gilder, Travis Doom, Michael Raymer, S. Ford. Differences in electropherogram peak heights reported by different versions of the Genescan(R) software. In 2003.
Travis Doom, S. Ford, Dan Krane, W. Thompson, Michael Raymer. Evaluating forensic DNA evidence: Breaking open the black box (how to review electronic data). 2003 ;.
W. Thompson, Michael Raymer, Dan Krane, Travis Doom, S. Ford. Evaluating forensic DNA evidence: Essential elements of a competent defense review. 2003 ;.
J. Gilder, Dan Krane, Travis Doom, Michael Raymer. Identifying patterns in DNA change. 2003.
Dan Krane, Travis Doom, Michael Raymer. An interdisciplinary undergraduate bioinformatics curriculum for biological scientists. 2003 ;.
Michael Raymer, Travis Doom, Dan Krane. NSF workshop on incorporating genomics into the undergraduate curriculum II. In 2003.
2004
Dan Krane, Travis Doom, Michael Raymer. Bioinformatics: Where Biology meets Computer Science. 2004 ;.
Dan Krane, Travis Doom, L. Mueller, Michael Raymer, W. Shields, William Thompson. Commentary on: Budowle B, Shea B, Niezgoda S, Chakraborty r. CODIS STR loci data from 41 sample populations. J Forensic Sci 2001;46:453-489. Journal of Forensic Science. ASTM International; 2004 ;49(6):1388-1389.
M. Peterson, Michael Raymer, Travis Doom. GA-facilitated knowledge discovery and pattern recognition optimization applied to the biochemistry of protein solvation. In 2004.
Dan Krane, Travis Doom, G. Cooper, N. Futamura, Michael Raymer. Indexing genomic databases. In 2004.
M. Peterson, Travis Doom, Michael Raymer. Knowledge Discovery in Large Biological Data Sets Using Hybrid Classifier/Evolutionary Algorithms. In 2004.
Michael Raymer, Travis Doom, M. Peterson. Knowledge Discovery in Large Biological Data Sets Using Hybrid Classifier/Evolutionary Algorithms. In 2004.
Michael Raymer, S. Ford, J. Gilder, Travis Doom, Dan Krane. Systematic differences in electropherogram peak heights reported by different version of the Genescan software. Journal of Forensic Science. 2004 ;.
Dan Krane, Michael Raymer, Travis Doom, S. Ford, J. Gilder. Systematic differences in electropherogram peak heights reported by different version of the Genescan® software. 2004 ;.
2005
C. Krane, Dan Krane, Michael Raymer, Travis Doom, D. Paoletti. Empirical Analysis of the STR profiles resulting from conceptual mixtures. 2005 ;.
Travis Doom, Michael Raymer, M. Peterson. GA-facilitated classifier optimization with varying similarity measures. 2005 ;.
M. Peterson, Michael Raymer, Travis Doom. GA-Facilitated KNN Classifier Optimization with Varying Similarity Measures. In 2005.
D. Raiford, Travis Doom, Michael Raymer, P. Erson, D. Sweeney. A Stochastic Model of Protease-Ligand Reactions. 2005.
2006
Travis Doom, S. Ramachran, Michael Raymer, Dan Krane. ALU elements as time series genomic data. In 2006.
E. Heizer, D. Raiford, Michael Raymer, Travis Doom, R. Miller, Dan Krane. Amino Acid Cost and Codon Usage Biases in Six Prokaryotic Genomes: A Whole Genome Analysis. 2006 ;.
Michael Raymer, Dan Krane, D. Paoletti, Travis Doom. Assesing the implications for close relatives in the event of similar but non-matching DNA profiles. 2006 ;.
D. Raiford, Dan Krane, Travis Doom, Michael Raymer. Isolation and visualization of codon usage biases. In 2006.
2007
B. Kelly, Travis Doom, P. Erson, Nicholas Reo, Nicholas J. DelRaso, Michael Raymer. Comparison of Statistical Techniques for the Analysis of Metabolic Toxicological Data Derived from NMR Spectroscopy. In 2007.
Dan Krane, Travis Doom, Michael Raymer, D. Raiford. A multi-objective genetic algorithm that employs a hybrid approach for isolating codon usage bias indicative of translational efficiency. In 2007.
Michael Raymer, Nicholas Reo, P. Erson, Travis Doom, B. Kelly, Nicholas J. DelRaso. A proposed statistical protocol for the analysis of metabolic toxicological data derived from NMR spectroscopy. In 2007.
2008
Doug Raiford, D. Raiford, D. Krane, Dan Krane, Travis Doom, Michael Raymer. Automated Isolation of Translational Efficiency Bias that Resists the Confounding Effect of GC(AT)-Content. 2008 ;.
D. Raiford, Doug Raiford, Dan Krane, Travis Doom, Michael Raymer. A Genetic Optimization Approach for Isolating Translational Efficiency Bias. IEEE Control Systems Society. 2008 ;.
D. Paoletti, Michael Raymer, Travis Doom, Dan Krane. Inferring the Number of Contributors to Mixed DNA Profiles. 2008 ;.
Dan Krane, Michael Raymer, J. Gilder, K. Inman, Travis Doom. Resolution of Forensic DNA Mixtures. 2008 ;.
2009
Travis Doom, D. Krane, Doug Raiford, Michael Raymer. Automated Isolation of Translational Efficiency Bias that Resists the Confounding Effect of GC(AT)-Content. IEEE Control Systems Society. 2009 ;.  (4.46 MB)
Travis Doom, Ben Kelly, Paul Anderson, Michael Raymer, Nicholas J. DelRaso, Nicholas Reo. Characterization of 1H NMR Spectroscopic Data and the Generation of Synthetic Validation Sets. In Characterization of 1H NMR Spectroscopic Data and the Generation of Synthetic Validation Sets. 2009.
Travis Doom, Amanda Hanes, D. Krane, Michael Raymer. A Comparison of Codon Usage Trends in Prokaryotes. In A Comparison of Codon Usage Trends in Prokaryotes. 2009.
Douglas Raiford, Dan Krane, Travis Doom, Michael Raymer. A Genetic Optimization Approach for Isolating Translational Efficiency Bias. IEEE/ACM Transactions on Computational Biology and Bioinformatics. IEEE Computer Society Press; 2009 ;8(2):342-352.  (1.85 MB)



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