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biomedical data integration
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
biomedical knowledge discovery
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
Chagas Disease
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
Collaborative Bio-Ontology
Raghava Mutharaju, Satya Sahoo, Pramod Anantharam, Rick Tarleton, Flora Logan, Amit Sheth, D. Brent Weatherly. Trykipedia: Collaborative Bio-Ontology Development using Wiki Environment. In Ohio Collaborative Conference on BioInformatics (OCCBIO 2009). Case Western Reserve University, Cleveland, OH; 2009.  (855.95 KB)
Entrez Gene
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
forms based querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
Gene Ontology
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
knowledge integration
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
knowledge-driven querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
ontology and provenance and RDF triple
Vinh Nguyen, Priti Parikh, Satya Sahoo, Amit Sheth. Managing Provenance Information in Parasite Research. In Ohio State University, Columbus; 2010.  (890.96 KB)
OWL
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.
Paige tools
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
Parasite Knowledge Repository
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
Provenance Management Framework
Roger Barga, Jonathan Goldstein, Krishnaprasad Thirunarayan, Satya Sahoo, Amit Sheth. Where Did You Come From.. Where Did You Go ? -An Algebra and Query Engine for Scientific Data Provenance. 2009 ;.
Satya Sahoo, Roger Barga, Krishnaprasad Thirunarayan, Amit Sheth, Jonathan Goldstein. Where Did You Come From.. Where Did You Go ? -An Algebra and Query Engine for Scientific Data Provenance. Computing. 2009 ;.
Provenir ontology and Provenance context entity and Biomedical knowledge repository and Context theory and RDF reification
Satya Sahoo, Olivier Bodenreider, Krishnaprasad Thirunarayan, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. Scientific and Statistical Database Management (SSDBM 2010). Heidelberg, Germany; 2010. p. 461-470.  (534.62 KB)
rdf
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
Semantic Data Integration
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
semantic problem-solving environment
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
Semantic Web
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
Satya Sahoo, Kelly Zeng, Olivier Bodenreider, Amit Sheth. From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 2007 ;.
T. cruzi
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
template based querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
This paper illustrates how Semantic Web technologies (especially RDF
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.
Trypanosoma cruzi
Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya Sahoo, Prashant Doshi, Rick Tarleton, Amit Sheth. A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi. 2012 ;.
we integrate gene and pathway information and show how three complex biological queries can be answered by the integrated knowledge base.
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.



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