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we integrate gene and pathway information and show how three complex biological queries can be answered by the integrated knowledge base.
Satya Sahoo, Olivier Bodenreider, Joni Rutter, Karen Skinner, Amit Sheth. An Ontology-Driven Semantic Mashup of Gene and Biological Pathway Information: Application to the Domain of Nicotine Dependence. 2008 ;.
template based querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
Provenir ontology and Provenance context entity and Biomedical knowledge repository and Context theory and RDF reification
Satya Sahoo, Olivier Bodenreider, Krishnaprasad Thirunarayan, Pascal Hitzler, Amit Sheth. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. Scientific and Statistical Database Management (SSDBM 2010). Heidelberg, Germany; 2010. p. 461-470.  (534.62 KB)
Parasite Knowledge Repository
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
ontology and provenance and RDF triple
Vinh Nguyen, Priti Parikh, Satya Sahoo, Amit Sheth. Managing Provenance Information in Parasite Research. In Ohio State University, Columbus; 2010.  (890.96 KB)
knowledge-driven querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
forms based querying
Amir Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, Rick Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. 9th International Conference on Data Integration in the Life Sciences (DILS '13). Montreal, Canada; 2013.  (301.35 KB)
Collaborative Bio-Ontology
Raghava Mutharaju, Satya Sahoo, Pramod Anantharam, Rick Tarleton, Flora Logan, Amit Sheth, D. Brent Weatherly. Trykipedia: Collaborative Bio-Ontology Development using Wiki Environment. In Ohio Collaborative Conference on BioInformatics (OCCBIO 2009). Case Western Reserve University, Cleveland, OH; 2009.  (855.95 KB)