From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data

TitleFrom Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data
Publication TypeConference Paper
Year of Publication2013
AuthorsAmir H. Asiaee, Prashant Doshi, Todd Minning, Satya S. Sahoo, Priti Parikh, Amit Sheth, Rick L. Tarleton
Conference Name Data Integration in the Life Sciences, DILS 2013
PublisherSpringer
Conference LocationBerlin, Heidelberg
ISBN Number978-3-642-39437-9
KeywordsAdvantag, Tate, Trypanosoma
Abstract

We compare two distinct approaches for querying data in the context of the life sciences. The first approach utilizes conventional databases to store the data and provides intuitive form-based interfaces to facilitate querying of the data, commonly used by the life science researchers that we study. The second approach utilizes a large OWL ontology and the same datasets associated as RDF instances of the ontology. Both approaches are being used in parallel by a team of cell biologists in their daily research activities, with the objective of gradually replacing the conventional approach with the knowledgedriven one. We describe several benefits of the knowledge-driven approach in comparison to the traditional one, and highlight a few limitations. We believe that our analysis not only explicitly highlights the benefits and limitations of semantic Web technologies in the context of life sciences but also contributes toward effective ways of translating a question in a researcher’s mind into precise queries with the intent of obtaining effective answers.

Full Text

Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth, and Rick L. Tarleton. From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data, Kno.e.sis Center Technical Report 2010.
research center: Kno.e.sis
project: Tcruzi
year: 2010
related resource url: http://scholar.google.com/citations?view_op=view_citation&hl=en&user=2T3...
hasURL: http://knoesis.wright.edu/library/download/ADM+11-ESWC-submission.pdf

Cite this paper as:
Asiaee A.H. et al. (2013) From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. In: Baker C.J.O., Butler G., Jurisica I. (eds) Data Integration in the Life Sciences. DILS 2013. Lecture Notes in Computer Science, vol 7970. Springer, Berlin, Heidelberg

Springer Link:
https://link.springer.com/chapter/10.1007/978-3-642-39437-9_3