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Sahoo SS et al JBI resource page <meta name="description" content="semantic Web, semantic bioinformatics, schema mapping, EKoM, BioPAX ontology, gene-pathway knowledgebase"/>

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An ontology-driven semantic mash-up of gene and biological pathway information: Application to the domain of nicotine dependence

This is a resource page for the paper on semantic integration of gene-pathway information

Resources created for this paper

Entrez Knowledge Model (EKoM) (OWL-DL) Schema (OWL-File)
Entrez Gene-Homologene RDF Dataset (44MB, 376,000 Triples) Download
SPARQL query set

Links to open source tools and data used in this paper

Name	Institution
Dataset User List
satya	knoesis
angela	Universisty of Georgia
Joshua Phillips	SemanticBits, LLC
neha bahl	national university of singapore
Pablo Mendes	knoesis
Carlos S. Zamudio	Semantic Laboratories
bharath	RGIT
Anna Bauer-Mehren	IMIM
Phil Goetz	JCVI
Nelson	JCVI
Ahmed-Diouf	LITIS Laboratory
Vimala	Nova

Citation

Authors : Satya S. Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner and Amit P. Sheth, An ontology-driven semantic mash-up of gene and biological pathway information: Application to the domain of nicotine dependence, Journal of Biomedical Informatics Special Issue : Semantic Biomedical Mashups
Keywords :Semantic web; Semantic mashup; Nicotine dependence; Information integration; Ontologies
Contact :Andrew Riddle